nevrome's Repositories

Transparent and Open Archaeological Science Using R A Short Workshop at the Society of American Archaeology Annual Meeting, Albuquerque Convention Center

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CLI tool to resolve AADR publication keys

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aca_data_collection

collection of archaeological data for training purposes

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Discover and install useful RStudio addins

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Archives des datations radiocarbone d'Afrique centrale

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Faked GIS-Datasets, simulating an island in the Atlantic for educational purposes in using GIS in archaeology

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automagically install packages necessary to run R code

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badges-for-open-practices

The OSIG awards Center for Open Science badges to qualifying archaeologists for display on their conference presentations (posters/slide decks)

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Datasets used in Binford's 2001 book "Constructing Frames of Reference: An Analytical Method for Archaeological Theory Building Using Ethnographic and Environmental Data Sets"

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binford-analysis

Seminar Paper "Reconstructing Frames of Reference"

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bioconda-recipes

Conda recipes for the bioconda channel.

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R Package - Spatiotemporal Data Interpolation and Visualisation based on 3D Tessellation

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CalPal-Database

Interface for 14C-Database CalPal

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conda-presentation

conda-presentation

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Some R code to look at conference submissions

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R package - Load, visualise and analyse daily updated data on the COVID-19 outbreak in Germany

⭐ 46 🌐 Public 📦 Archived

cultrans.bronzeageburials.article2019

Research compendium for ‘Evaluating Cultural Transmission in Bronze Age burial rites of Central, Northern and North-western Europe using radiocarbon data’

⭐ 4 🌐 Public

cultrans.bronzeageburials.ccs2018

Presentation for CCS2018

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cultrans.bronzeageburials.FUBerlin2020

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cultrans.bronzeageburials.NASHH2019

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cultrans.bronzeageburials.UW2019

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Radiocarbon calibration command line tool and Haskell module

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docker_postgres838_postgis135

Docker image for PostgreSQL 8.3.8 with PostGIS 1.3.5

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eepp is an open source cross-platform game and application development framework heavily focused on the development of rich graphical user interfaces.

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Eigen tools by Nick Patterson and Alkes Price lab

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exp_dat_reading_group_2021

Public Repository of our Fall 2021 Reading group on PCA, STRUCTURE and other means of low-dimensional representation of genetic data

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game-in-haskell

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Conway's Game of Life in Futhark

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R Package - Rearrange scatter plot points on a regular grid

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ggret: Visualisation of tree-based phylogenetic networks

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An idea expansion simulation

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HAAM.poseidon.intro.1h.2024

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Research compendium for a contribution to ‘Human Occupation and Environmental Change in the Western Maghreb during the Last Glacial Maximum (LGM) and the Late Glacial. New Evidence from the Iberomaurusian Site Ifri El Baroud (North-east Morocco)’

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Early prototype of a pedigree exploration expert system

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R Package: Wrapper for the LanguageTool checking engine

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R code to do Local Density Analysis

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leaflet-rails-example

example app for leaflet embed in rails A

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Just an other morse code translator.

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Code repository of the book by Oliver Nakoinz and Daniel Knitter "Modelling Human Behaviour in Landscapes -- Basic concepts and modelling elements"

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R Package - Spatiotemporal Ancestry Interpolation and Search

⭐ 9 🌐 Public

mobest.analysis.2022

Research compendium for ‘Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data’; If you want to perform spatio-temporal similary search with the mobest R package as presented in the paper, then you can directly check the documentation here: https://nevrome.de/mobest

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R-package providing a toolset for (3D-based) Geometric Morphometrics

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This is a Test Compendium.

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The modular library of the "Network for Agent-based modelling of Socio-ecological systems in Archaeology" (NASSA)

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R Shiny Document - Visualizing model functions in Neimans 'Stylistic variation in evolutionary perspective' with an interactive document

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R Shiny App - Search engine for radiocarbon dates from different source databases

⭐ 12 🌐 Public 📦 Archived

neolithicRCpres

Präsentation über neolithicRC [11.2.2017]

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neomod_analysis

Analysis code and plots of my master thesis *Ein computerbasiertes Cultural Evolution Modell zur Ausbreitungsdynamik europäisch-bronzezeitlicher Bestattungssitten*

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neomod_prepresentation

Presentations during and after my master thesis *Ein computerbasiertes Cultural Evolution Modell zur Ausbreitungsdynamik europäisch-bronzezeitlicher Bestattungssitten*

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Text of my master thesis *Ein computerbasiertes Cultural Evolution Modell zur Ausbreitungsdynamik europäisch-bronzezeitlicher Bestattungssitten*

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NTU.R.tidyverse.intro.2h.2022

A 2h R tidyverse intro course

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olympia.votiveweapons.article2021

Research compendium for ‘Votive Weapons in the Panhellenic Sanctuary of Olympia (10th - 5th Centuries BC): Diachronic Development’

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A curated list of open resources created with archaeological practices in mind.

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Open Weather Map Wrapper in V

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Experiments with the genotype data generators in xerxes

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R package to facilitate rOpenSci package reviews.

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PNPLA3_AADR_analysis

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popgen.styletrans.saa2019

Presentation for SAA2019

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A population network generator

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A course with Jupyter Notebooks for Computational Population Genetics

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poseidon.analysis.2024

Data analysis code for 'Poseidon - A framework for archaeogenetic human genotype data management'

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poseidon_c1global1nfd_public

Poseidon package for the c1global1nfd_public dataset originally compiled for Peter, Petkova & Novembre 2020 (https://doi.org/10.1093/molbev/msz280), and then published with Shastry, Musiani & Novembre 2025 (https://doi.org/10.1101/2025.02.10.637386)

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R.aDNA.ARCASWorkshop2023

A 1h intro to aDNA genotype data, stream processing, PCAs and our mobest algorithm

⭐ 2 🌐 Public

R.futhark.example

Very basic test package to explore how one could run and develop Futhark code through Rcpp in an R package

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Isolate essential code to re-produce specific results.

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RcppProgress R package: An interruptible progress bar with OpenMP support for c++ in R packages

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Find packages required for code to run

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R Package - 3D plots with the Irrlicht game engine

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rrdm-shh.github.io

Website for Reproducible research and data management workshop at MPI-SHH

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rrtools: Tools for Writing Reproducible Research in R

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R Package - A graphical user interface for some of the main functions of Ben Marwick's rrtools package

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rrtools.tutorial.mpi2020

A short tutorial about rrtools (Reproducible Research with R)

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R Package - API to access the SMMRY web service

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R Package - R interface for SPLATCHE3 (http://www.splatche.com/splatche3)

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sdsbrowser.sdsanalysis.caa2019

Presentation: sdsbrowser - an R Shiny Application for visualisation and analysis of SDS stone artefact data

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ShakeExperiment

An example how to use the Shake build system to define a simple, computational pipeline

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software-review

rOpenSci Software Peer Review of community-contributed packages

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SPAAM.R.tidyverse.intro.2h.2022

A 2h R tidyverse intro course

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"Stable Hackage": vetted consistent packages from Hackage

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statement.ssla.roundtable.caa2019

Statement for the CAA2019 Roundtable Scientific Scripting Languages in Archaeology - Limits and Opportunities of Open Research

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R package for archaeological stratigraphy and chronological sequences

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SystemRequirements mappings for R packages

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Haskell Tiny Game Jam

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tutorial_cologne_may2017

R Tutorial für den Grünen Tisch in Köln am 17.5.2017

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R Package - A very simple string and number storage system

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uni.tuebingen.poseidon.intro.2h.2024

Website for a ~2h demonstration of Poseidon and some of its tools, features and components

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R package to analyse some aspects of prehistoric burial sites

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Convenient random number generators for V

⭐ 6 🌐 Public 📦 Archived